Xiaohua Wan

Personal Information

Assistant Researcher

Center for Advanced Computing Research

Institute of Computing Technology, CAS

Email Address: bjwxiaohua@gmail.com

Research Interests

Computer Algorithms (especially in 3D reconstructions and image alignments)

Parallel and distributed Processing

Image processing

Education and Business Experience

September 2008 - July 2012 Ph.D., Computer Science

Institute of Computing Technology, Chinese Academy of Sciences

The topic of my thesis is 'Research and Optimizations of Three-dimensional Reconstruction Algorithms in Electron Tomography'.

July 2012 - Present Assistant Researcher

Institute of Computing Technology, Chinese Academy of Sciences

Publications

  1. Ruijuan Chen, Xiaohua Wan, Ilkay Altintas et. al., 'EPiK-a Workflow for Electron Tomography in Kepler', Procedia Computer Science, 29(2014), 2295-2305. (Co-first author).
  2. Xiaohua Wan, Sebastien Phan, Albert Lawrence et. al., 'Iterative Methods in Large Field Electron Microscope Tomography', SIAM Journal on Scientific Computing, 35 (2013), S402-S419.
  3. Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu, 'High-performance Blob-based Iterative Three-dimensional Reconstruction in Electron Tomography Using Multi-GPUs', BMC bioinformatics, 13(Suppl 10):S4, 2012.
  4. Xiaohua Wan, Fa Zhang, Qi Chu et. al., 'Three-dimensional Reconstruction Using an Adaptive Simultaneous Algebraic Reconstruction Technique in Electron Tomography', Journal of Structural Biology, 175:277-287, 2011.
  5. Xiaohua Wan, Fa Zhang, Qi Chu et. al., 'High-performance Blob-based Iterative Reconstruction of Electron Tomography on Multi-GPUs', International Symposium on Bioinformatics Research and Applications (ISBRA), Lecture Notes in Bioinformatics, Springer Verlag, 6674: 61-72, 2011.
  6. Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu, 'Three-dimensional reconstruction of electron tomography using graphic processing units (GPUs)', International Workshop of GPU Solutions to Multi-scale Problems in Science and Engineering (GPU-SMP), July, 2010.
  7. Xiaohua Wan, Fa Zhang, Zhiyong Liu, 'Modified Simultaneous Algebraic Reconstruction Technique and its Parallelization in Cryo-electron Tomography', In Proceedings of the 15th International Conference of Parallel and Distributed Systems (ICPADS), December, 2009.
  8. Xiaohua Wan, Fa Zhang, Zhiyong Liu, 'A Parallel Iterative Algorithm for Three-dimensional Reconstruction of Cryo-electron Tomography', Journal of Microelectronics and Computer (in Chinese), August, 2009.
  9. Xiaohua Wan, Xia Zhong, Jianxun Chen, 'Research of the 8051 IP kernel development system', Journal of Control and Automation (in Chinese), June, 2008.
  10. Xiaohua Wan, 'A kind of Late-model and multifunctional CAN embedded module's development', In Proceedings of International Conference of Modern Science and Technology (IWMST), May, 2006.
  11. Xiaohua Wan, Liankun Chen, 'A Speech Code Algorithm on SCM and its Application', Journal of Computer Engineering (in Chinese), June 2005.
  12. Jingrong Zhang, Xiaohua Wan, Fa Zhang et. al., 'A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography', International Symposium on Bioinformatics Research and Applications (ISBRA 2014), 102-113.
  13. Yu Chen, Fei Ren, Xiaohua Wan et. al., 'An Improved Correlation Method Based on Rotation Invariant Feature for Automatic Particle Selection', International Symposium on Bioinformatics Research and Applications (ISBRA 2014), 114-125.
  14. Renmin Han, Fa Zhang, Xiaohua Wan et. al., 'A Marker-free Automatic Alignment Method Based on Scale-invariant Features', Journal of Structural Biology, 186(1): 167-180, 2014.
  15. Qi Chu, Kai Zhang, Xiaohua Wan et. al., 'ATOM 1.0: a GPU Powered Package for Electron Tomography Reconstruction', Acta Biophysica Sinica, 27:231-241, 2011.
  16. Qi Chu, Fa Zhang, Kai Zhang, Xiaohua Wan, Mingwei Chen, Zhiyong Liu, 'An Accurate, Automatic Method for Markerless Alignment of Electron Tomographic Images', The Proceedings of IEEE International Conference on Bioinformatics & Biomedicine (BIBM), December 2010.