主要论文：

1. Yang B, Wu YJ, Zhu M, Fan SB, Lin JZ, Li S, Luo SK, Zhang K, Xiu LY, Li YX, Chen S, Ye KQ, He SM, Dong MQ. Identification of cross-linked peptides from complex samples. Nat Methods. (Published online)

2. Qu M, Yang B, Tao Li, Yates JR 3rd, Russell P, Dong MQ, Du LL. Phosphorylation-dependent interactions between Crb2 and Chk1 mediate the activation of DNA damage checkpoint in fission yeast. PLoS Genet. (Published online)

3. Li S, Duan J, Li D, Yang B, Dong M, Ye K. Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes Dev. 2011 Nov 15;25(22):2409-21.

4. Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ. pNovo: de novo peptide sequencing and identification using HCD spectra. J Proteome Res. 2010 May 7;9(5):2713-24.

5. Sun RX, Dong MQ, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra. J Proteome Res. 2010 Dec 3;9(12):6354-67.

6. Yang B, Ying W, Gong Y, Zhang Y, Cai Y, Dong H, Qian X. Using cross-correlation normalized for peptide length to optimize peptide identification in shotgun proteomics. Rapid Commun Mass Spectrom. 2005; 19(20):2983-5.

7. Chen M, Yang B, Ying W, He F, Qian X. Annotation of non-synonymous single polymorphisms in human liver proteome by mass spectrometry. Protein Pept Lett. 2010 Mar;17(3):277-86.

8. Sui S, Wang J, Yang B, Song L, Zhang J, Chen M, Liu J, Lu Z, Cai Y, Chen S, Bi W, Zhu Y, He F, Qian X. Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics. 2008 May;8(10):2024-34.

9. Chen M, Ying W, Song Y, Liu X, Yang B, Wu S, Jiang Y, Cai Y, He F, Qian X. Analysis of human liver proteome using replicate shotgun strategy. Proteomics 2007 Jul; 7(14): 2479-2488.

10. Gong Y, Li X, Yang B, Ying W, Li D, Zhang Y, Dai S, Cai Y, Wang J, He F, Qian X. Different immunoaffinity fractionation strategies to characterize the human plasma proteome. J Proteome Res. 2006 Jun; 5(6): 1379-1387.

11. Dai J, Wang J, Zhang Y, Lu Z, Yang B, Li X, Cai Y, Qian X. Enrichment and identification of cysteine-containing peptides from tryptic digests of performic oxidized proteins by strong cation exchange LC and MALDI-TOF/TOF MS. Anal Chem. 2005 Dec 1; 77(23): 7594-7604.